Research Outputs

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    Publication
    Genome sequencing variations in the Octodon degus, an unconventional natural model of aging and Alzheimer's disease
    (Frontiers, 2022)
    Hurley, Michael J.
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    Urra, Claudio
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    Garduno, B. Maximiliano
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    Bruno, Agostino
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    Kimbell, Allison
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    Wilkinson, Brent
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    Marino Buslje, Cristina
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    Ezquer, Marcelo
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    Ezquer, Fernando
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    Aburto, Pedro F.
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    Poulin, Elie
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    Vásquez, Rodrigo A.
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    Deacon, Robert
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    Deacon, Francisco
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    Whitney Vanderklish, Peter
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    Zampieri, Guido
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    Angione, Claudio
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    Constantino, Gabriele
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    Holmes, Todd C.
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    Coba, Marcelo P.
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    Xu, Xiangmin
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    Cogram, Patricia
    The degu (Octodon degus) is a diurnal long-lived rodent that can spontaneously develop molecular and behavioral changes that mirror those seen in human aging. With age some degu, but not all individuals, develop cognitive decline and brain pathology like that observed in Alzheimer's disease including neuroinflammation, hyperphosphorylated tau and amyloid plaques, together with other co-morbidities associated with aging such as macular degeneration, cataracts, alterations in circadian rhythm, diabetes and atherosclerosis. Here we report the whole-genome sequencing and analysis of the degu genome, which revealed unique features and molecular adaptations consistent with aging and Alzheimer's disease. We identified single nucleotide polymorphisms in genes associated with Alzheimer's disease including a novel apolipoprotein E (Apoe) gene variant that correlated with an increase in amyloid plaques in brain and modified the in silico predicted degu APOE protein structure and functionality. The reported genome of an unconventional long-lived animal model of aging and Alzheimer's disease offers the opportunity for understanding molecular pathways involved in aging and should help advance biomedical research into treatments for Alzheimer's disease.
  • Publication
    MeCP2 gene therapy ameliorates disease phenotype in mouse model for Pitt Hopkins syndrome
    (Elsevier, 2024) ;
    Dennys, Cassandra
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    Vermudez, Sheryl
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    Deacon, Robert
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    Sierra-Delgado, J.
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    Rich, Kelly
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    Zhang, Xiaojin
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    Buch, Aditi
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    Weiss, Kelly
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    Moxley, Yuta
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    Rajpal, Hemangi
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    Espinoza, Francisca
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    Powers, Samantha
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    Gogliotti, Rocco
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    Cogram, Patricia
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    Niswender, Colleen
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    Meyer, Kathrin
    The neurodevelopmental disorder Pitt Hopkins syndrome (PTHS) causes clinical symptoms similar to Rett syndrome (RTT) patients. However, RTT is caused by MECP2 mutations whereas mutations in the TCF4 gene lead to PTHS. The mechanistic commonalities underling these two disorders are unknown, but their shared symptomology suggest that convergent pathway-level disruption likely exists. We reprogrammed patient skin derived fibroblasts into induced neuronal progenitor cells. Interestingly, we discovered that MeCP2 levels were decreased in PTHS patient iNPCs relative to healthy controls and that both iNPCs and iAstrocytes displayed defects in function and differentiation in a mutation-specific manner. When Tcf4þ+/- mice were genetically crossed with mice overexpressing MeCP2, molecular and phenotypic defects were significantly ameliorated, underlining and important role of MeCP2 in PTHS pathology. Importantly, post-natal intracerebroventricular gene replacement therapy with adeno-associated viral vector serotype 9 (AAV9)-expressing MeCP2 (AAV9.P546.MeCP2) significantly improved iNPC and iAstrocyte function and effectively ameliorated histological and behavioral defects in Tcf4þ+/- mice. Combined, our data suggest a previously unknown role of MeCP2 in PTHS pathology and common pathways that might be affected in multiple neurodevelopmental disorders. Our work highlights potential novel therapeutic targets for PTHS, including upregulation of MeCP2 expression or its downstream targets or, potentially, MeCP2-based gene therapy.