Hydrodynamics are a major environmental factor on intertidal rocky shores. Morphological responses to this factor are expected to strongly influence spatial distribution of species across environmental gradients. We here analysed the shell phenotypic variability of the limpet Fissurella latimarginata using geometric morphometric analysis. The limpets were obtained from a sheltered intertidal coastal area and a wave-exposed environment. To determine whether the shell shape variation of the intertidal molluscs is linked to their resistance to differential intertidal wave exposure, mesocosm studies were developed in a hydraulic flume to explore the effects of hydrodynamic forces on this limpet species. A unidirectional current was used to test the impacts of step-by-step increased current flow velocities for each limpet. The phenotypic variability observed in the populations of F. latimarginata was associated with habitats characterized by contrasting wave exposure. Limpets from exposed environments showed a flattened, round to laterally wider and posteriorly narrower shell shape, larger foot and higher full limpet height, and were dislodged at higher velocities. A more laterally compressed and peaked shape was found in limpets from sheltered areas and these showed a lower resistance to wave action by dislodging at lower velocities.