Decapods have successfully colonized changing coastal habitats throughout the world by adapting their behavior, physiology, and biochemistry. Biochemical reserves, such as lipids and fatty acids (FAs), play fundamental roles in this adaptation process. These energy reserves are key for the development of decapods and their composition mainly depends on the type and quality of food available in their habitats. This study evaluated the lipid content and FA composition of three tissues (hepatopancreas, gills, and muscle) in two widely distributed, semi-terrestrial coastal crab species in Chile, Cyclograpsus cinereus from the upper intertidal and Hemigrapsus crenulatus from estuaries. This evaluation aimed to assess the physiological role of the bioenergetic reserves of these crabs, which tolerate fluctuating environmental conditions. Our results showed that both species had a higher lipid content in the hepatopancreas and a lower lipid content in its gills and muscle. All three of the evaluated tissues in C. cinereus showed high contents of saturated fatty acids (SFAs), and its hepatopancreas displayed the highest contents of monounsaturated (MUFAs) and polyunsaturated fatty acids (PUFAs). In turn, H. crenulatus had the highest contents of MUFAs and PUFAs in its gills and muscle tissues, including an important amount of eicosapentaenoic acid (EPA). The FA content of C. cinereus may indicate an adaptive physiological response aimed at maintaining its cellular fluid balance during periods of desiccation in the upper intertidal zone. In contrast, the FAs found in H. crenulatus may be linked to the high activity of the sodium‑potassium pump in its gills, in order to maintain osmoregulation in estuaries.