Swordfish (Xiphias gladius), a highly migratory fishery resource of great importance in the Southeastern Pacific Ocean (SEPO), is a species with late sexual maturation, high longevity, and a large body size that spawns and reproduces several times throughout its adulthood. In the present study, we hypothesized that the Biochemical-Ecological Composition (BEC) of the gonad (measured as the lipid, protein, glucose, and energy contents) and its bio-stoichiometric ratios (lipid/protein: L/P; lipid/ glucose: L/G) would be influenced by both female body size (lower jaw fork length in cm, LJFL: <180, 180–260, >260) and time (trimesters: 1,2,3; years: 2017, 2019). Our results revealed that in relation to their body size, female swordfish gonads varied significantly in their BEC, but not in their L/P and L/G ratios during their quarterly development within an annual cycle. These variations in the BEC were noticeable in females of medium (180–260) and larger (>260) sizes. Particularly, as the year progressed, females stored significant amounts of energy during their trophic migration, made evident by the increase in the lipid and protein contents of the gonads, which reached maximum levels towards the end of the year, during the second and third trimesters. These high energy reserves can be used for the reproduction during the last trimester of the year (i.e. austral spring–summer), when the warm temperature and high productivity in the SEPO are optimal for the successful development of oocytes. Future studies considering an ecosystem approach should analyze the classes of lipids and types of fatty acids that are involved in the reproduction of this species, and how they are acquired through the consumption of lipid-rich prey, and subsequently metabolized to be used in reproduction and during early ontogeny.