The adverse impacts of invasive salmonids on native galaxiids are well documented at the population level in the freshwater ecosystems of the Southern Hemisphere. However, the mechanism underlying these interactions and sub-lethal effects of salmonids on native galaxiids at the individual level remain poorly understood. In this study, a series of controlled experiments was conducted to assess sub-lethal interactions between invasive brown trout (Salmo trutta) and the native Galaxias platei at an individual level. The microhabitat preferences of G. platei were evaluated in response to potential competition with juvenile brown trout and predation risk from piscivorous adults. In addition, the swimming capacity of G. platei was assessed to determine their ability to escape predation. The results show that at increasing densities of juvenile brown trout, G. platei fails to increase refuge use and are more frequently observed in open habitats. Furthermore, G. platei juveniles exhibit significantly lower swimming capacity compared to brown trout. In the presence of predatory trout, G. platei does not display a heightened preference for refuge habitats. These findings suggest that the behavioral response of G. platei could be insufficient to reduce competition and predation risks posed by brown trout and potentially other salmonids.