Coastal marine upwelling famously supports elevated levels of pelagic biological production, but can also subsidize production in inshore habitats via pelagic‐benthic coupling. Consumers inhabiting macroalgae‐dominated rocky reef habitats are often considered to be members of a food web fuelled by energy derived from benthic primary production; conversely, they may also be subsidized by materials transported from pelagic habitats. Here, we used stable isotopes (δ13C, δ15N) to examine the relative contribution of pelagic and benthic materials to an ecologically and economically important benthivorous fish assemblage inhabiting subtidal macroalgae‐dominated reefs along ~1,000 km of the northern Chilean coast where coastal upwelling is active. Fish were isotopically most similar to the pelagic pathway and Bayesian mixing models indicated that production of benthivorous fish was dominated (median 98%, range 69–99%) by pelagic‐derived C and N. Although the mechanism by which these materials enter the benthic food web remains unknown, our results clearly highlight the importance of pelagic‐benthic coupling in the region. The scale of this subsidy has substantial implications for our basic understanding of ecosystem functioning and the management of nearshore habitats in northern Chile and other upwelling zones worldwide.